750 to 900 conversion. Fuel injection to carb

[Speeddog]

Checked all off the ignition components. Swapped the coils to the opposite sides...wires as well. Pick up coil is brand new. Belts are all lined up. This is a good one. Two Ducati tech's and right now I'm in my shop with about 7 other dudes who know their shit about bikes and none of us can come up with a solution

That means it's something really simple. 

Have you synced the carbs?

Intake manifold nuts tight, no leaks there?

When it's running, wiggle the wires from the pickup coils where they plug into the igniter boxes.

Have you swapped igniter boxes to see if the problem follows?

Aaand.... the spade connectors on the wiring harness where they attach to the coils, good tight fit?

[ducpainter]

Are you trying to run with a single ignition pickup, or did you swap in the dual pickups from the 750?