This could be caused by the really skinny rotors that Ducati spec's from Brembo. And also the aggressive sintered brake pads.
A few Ducatis suffer from a temporary heat induced warpage. Is common at the first part of a ride when the rotors are cool. Different sections of the rotor heat up unevenly and they warp. Usually, when the rotors come up to temp, the warp goes away.
I'm special, though. The warp stayed for me ...
I put the bike on stands and stuck a dial indicator on mag base against the stand with the dial gauge pointed at the edge of the rotor near the perimeter. They both had .030" of deflection. Yes, thirty thousandths.
That was what helped me get brake techs...
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