Jeez. Now this to deal with. Why are 999s so oddball is what I'd like to know. Monstermash - do you have a photo of how you oriented your stock throttle cable housing? I know you probably don't have that bike anymore. Was it sano or did it look kinda wierd? Cable going over the switchgear may bug me a little.
There's nothing really oddball about the 999, maybe except for the styling, but that's to each their own.
When you start mix and matching parts, things just not working out perfectly right off the bat is normal.
I don't remember why I flipped my throttle cable housing, but I do remember something was not working out in the stock position. Not sure if the issue I had applies to non-999 radial masters.