stopping, right foot down

[Dellikose]

The MSF course taught us right foot braking, left foot down. To be honest though, they didn't really harp on us if we put the right foot down first.

I would say whichever way that you feel comfortable with. That way, you're not thinking about, just doing it. 

[dk1six]

Same here, if it feels right to you is safe and comfortable then that's what you should do.  Back after I took the MSF course I tried the right foot down and then the left foot down and I was never able to get comfortable with one or the other.  So now for some time it's been both feet down at a stop with the bike in gear, this seems to work with for me.