I'm no electrical expert, but here's my thoughts after dealing with a little bit
You're voltage regulator just controls the amount of charge going to the battery continuously from the stator. It's not really going to determine how much of a charge the battery actually HOLDS.
It's a pretty simple task to run through the whole charging system, and that should really clear up where your issue is.
Here is a handy guide on doing a quick diagnosis of your charging system. You'll need a multimeter.
http://www.electrosport.com/media/pdf/fault-finding-diagram.pdfMy thread on a similar issue here may be helpful:
http://www.ducatimonsterforum.org/index.php?topic=57133.0It COULD be a regulator problem. The issue then is, why did you toast another regulator?
The regulator is like a gate for the juice. It has an OPEN and a CLOSED. When they bite the bullet, they either lock up in the open position, which will end up OVER charging your battery (and of course ruining it), or they lock in the closed position, which will under charge your battery.
You could be having a stator issue as well, just not generating enough juice to begin with... or it's OVER generating, which could be why you toasted another regulator.
Either way, that electrosport guide will help you narrow some things down.