When I posted some pics of my bike a couple people asked about the dyno runs, etc.
Here is what I had done to my bike. I had MonsterMash reflash the ECU to eliminate the O2 sensor and to try and get it close to running well with the full Zard system and the open airbox. I think overall he did a pretty good job, from looking at the charts. The shop then installed the PCIII USB that is meant for the S2R (800) and developed a custom map.
Here are the relevant charts:
The Blue is the baseline and Red is the custom map
Torque vs RPM
HP vs RPM
Air Fuel Ratio vs RPM