So for the sake of clarity, and I guess redundancy. All you need for a swap to a 5.5" rear is.
Wheel, cush drive, and the spacers?
I'd like to say yes absolutely, but you know things vary from bike to bike sometimes with ducatis. What I can say is I got a 900SS 5.5 inch rear with the cush drive and spacers. Took those parts and some of my origional parts, and it works on my '97 750.
You should not need any custom parts to make it fit.
Justin