After some internet searching I have found the workshop manual for the S2R 800 and 800 dark. I think a lot of the info is also useable for S2R1000 owners. You can download it here:
http://www.mediafire.com/?d2ho7l60s62c3l1I`ve tested the download, it seems to work, depending on the amount of downloads it should be available on the net for some while. And o yeah, section C 3 is about all torque values of every single bolt and nut of your Monster, including grease, glue or other geeky stuff Ducati describes....

I hope it is useful